diff -r c02712d2ab9e -r 415d034b0864 scc_access/scc_access.py
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/scc_access/scc_access.py Tue Dec 12 09:20:49 2017 +0200
@@ -0,0 +1,529 @@
+#!/usr/bin/env python
+"""
+The MIT License (MIT)
+
+Copyright (c) 2015, Ioannis Binietoglou
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.
+"""
+
+__version__ = "0.6.0"
+
+# Try to read the settings from the settings.py file
+try:
+ from settings import *
+except:
+ raise ImportError(
+ """A settings file (setting.py) is required to run the script.
+ You can use settings.sample.py as a template.""")
+
+import requests
+requests.packages.urllib3.disable_warnings()
+
+import urlparse
+import argparse
+import os
+import re
+import time
+import StringIO
+from zipfile import ZipFile
+import datetime
+import logging
+
+logger = logging.getLogger(__name__)
+
+
+# Construct the absolute URLs
+LOGIN_URL = urlparse.urljoin(BASE_URL, 'accounts/login/')
+UPLOAD_URL = urlparse.urljoin(BASE_URL, 'data_processing/measurements/quick/')
+DOWNLOAD_PREPROCESSED = urlparse.urljoin(BASE_URL, 'data_processing/measurements/{0}/download-preprocessed/')
+DOWNLOAD_OPTICAL = urlparse.urljoin(BASE_URL, 'data_processing/measurements/{0}/download-optical/')
+DOWNLOAD_GRAPH = urlparse.urljoin(BASE_URL, 'data_processing/measurements/{0}/download-plots/')
+RERUN_ALL = urlparse.urljoin(BASE_URL, 'data_processing/measurements/{0}/rerun-all/')
+RERUN_PROCESSING = urlparse.urljoin(BASE_URL, 'data_processing/measurements/{0}/rerun-optical/')
+
+DELETE_MEASUREMENT = urlparse.urljoin(BASE_URL, 'admin/database/measurements/{0}/delete/')
+API_BASE_URL = urlparse.urljoin(BASE_URL, 'api/v1/')
+
+# The regex to find the measurement id from the measurement page
+# This should be read from the uploaded file, but would require an extra NetCDF module.
+regex = "
Measurement (?P.{12}) "
+
+
+class SCC:
+ """ A simple class that will attempt to upload a file on the SCC server.
+ The uploading is done by simulating a normal browser session. In the current
+ version no check is performed, and no feedback is given if the upload
+ was successful. If everything is setup correctly, it will work.
+ """
+
+ def __init__(self, auth=BASIC_LOGIN, output_dir=OUTPUT_DIR):
+ self.auth = auth
+ self.output_dir = output_dir
+ self.session = requests.Session()
+
+ def login(self, credentials=DJANGO_LOGIN):
+ """ Login the the website. """
+ logger.debug("Attempting to login to SCC, username %s." % credentials[0])
+ self.login_credentials = {'username': credentials[0],
+ 'password': credentials[1]}
+
+ logger.debug("Accessing login page at %s." % LOGIN_URL)
+
+ # Get upload form
+ login_page = self.session.get(LOGIN_URL,
+ auth=self.auth, verify=False)
+
+ logger.debug("Submiting credentials.")
+ # Submit the login data
+ login_submit = self.session.post(LOGIN_URL,
+ data=self.login_credentials,
+ headers={'X-CSRFToken': login_page.cookies['csrftoken'],
+ 'referer': LOGIN_URL},
+ verify=False,
+ auth=self.auth)
+ return login_submit
+
+ def logout(self):
+ pass
+
+ def upload_file(self, filename, system_id):
+ """ Upload a filename for processing with a specific system. If the
+ upload is successful, it returns the measurement id. """
+ # Get submit page
+ upload_page = self.session.get(UPLOAD_URL,
+ auth=self.auth,
+ verify=False)
+
+ # Submit the data
+ upload_data = {'system': system_id}
+ files = {'data': open(filename, 'rb')}
+
+ logging.info("Uploading of file %s started." % filename)
+
+ upload_submit = self.session.post(UPLOAD_URL,
+ data=upload_data,
+ files=files,
+ headers={'X-CSRFToken': upload_page.cookies['csrftoken'],
+ 'referer': UPLOAD_URL},
+ verify=False,
+ auth=self.auth)
+
+ if upload_submit.status_code != 200:
+ logging.warning("Connection error. Status code: %s" % upload_submit.status_code)
+ return False
+
+ # Check if there was a redirect to a new page.
+ if upload_submit.url == UPLOAD_URL:
+ measurement_id = False
+ logging.error("Uploaded file rejected! Try to upload manually to see the error.")
+ else:
+ measurement_id = re.findall(regex, upload_submit.text)[0]
+ logging.error("Successfully uploaded measurement with id %s." % measurement_id)
+
+ return measurement_id
+
+ def download_files(self, measurement_id, subdir, download_url):
+ """ Downloads some files from the download_url to the specified
+ subdir. This method is used to download preprocessed file, optical
+ files etc.
+ """
+ # Get the file
+ request = self.session.get(download_url, auth=self.auth,
+ verify=False,
+ stream=True)
+
+ # Create the dir if it does not exist
+ local_dir = os.path.join(self.output_dir, measurement_id, subdir)
+ if not os.path.exists(local_dir):
+ os.makedirs(local_dir)
+
+ # Save the file by chunk, needed if the file is big.
+ memory_file = StringIO.StringIO()
+
+ for chunk in request.iter_content(chunk_size=1024):
+ if chunk: # filter out keep-alive new chunks
+ memory_file.write(chunk)
+ memory_file.flush()
+
+ zip_file = ZipFile(memory_file)
+
+ for ziped_name in zip_file.namelist():
+ basename = os.path.basename(ziped_name)
+
+ local_file = os.path.join(local_dir, basename)
+
+ with open(local_file, 'wb') as f:
+ f.write(zip_file.read(ziped_name))
+
+ def download_preprocessed(self, measurement_id):
+ """ Download preprocessed files for the measurement id. """
+ # Construct the download url
+ download_url = DOWNLOAD_PREPROCESSED.format(measurement_id)
+ self.download_files(measurement_id, 'scc_preprocessed', download_url)
+
+ def download_optical(self, measurement_id):
+ """ Download optical files for the measurement id. """
+ # Construct the download url
+ download_url = DOWNLOAD_OPTICAL.format(measurement_id)
+ self.download_files(measurement_id, 'scc_optical', download_url)
+
+ def download_graphs(self, measurement_id):
+ """ Download profile graphs for the measurement id. """
+ # Construct the download url
+ download_url = DOWNLOAD_GRAPH.format(measurement_id)
+ self.download_files(measurement_id, 'scc_plots', download_url)
+
+ def rerun_processing(self, measurement_id, monitor=True):
+ measurement = self.get_measurement(measurement_id)
+
+ if measurement:
+ request = self.session.get(measurement.rerun_processing_url, auth=self.auth,
+ verify=False,
+ stream=True)
+
+ if request.status_code != 200:
+ logging.error("Could not rerun processing for %s. Status code: %s" % (measurement_id, request.status_code))
+ return
+
+ if monitor:
+ self.monitor_processing(measurement_id)
+
+ def rerun_all(self, measurement_id, monitor=True):
+ logger.debug("Started rerun_all procedure.")
+
+ logger.debug("Getting measurement %s" % measurement_id)
+ measurement = self.get_measurement(measurement_id)
+
+ if measurement:
+ logger.debug("Attempting to rerun all processing through %s." % measurement.rerun_all_url)
+
+ request = self.session.get(measurement.rerun_all_url, auth=self.auth,
+ verify=False,
+ stream=True)
+
+ if request.status_code != 200:
+ logger.error("Could not rerun pre processing for %s. Status code: %s" %
+ (measurement_id, request.status_code))
+ return
+
+ if monitor:
+ self.monitor_processing(measurement_id)
+
+ def process(self, filename, system_id):
+ """ Upload a file for processing and wait for the processing to finish.
+ If the processing is successful, it will download all produced files.
+ """
+ logger.info("--- Processing started on %s. ---" % datetime.datetime.now())
+ # Upload file
+ measurement_id = self.upload_file(filename, system_id)
+
+ measurement = self.monitor_processing(measurement_id)
+ return measurement
+
+ def monitor_processing(self, measurement_id):
+ """ Monitor the processing progress of a measurement id"""
+
+ measurement = self.get_measurement(measurement_id)
+ if measurement is not None:
+ while measurement.is_running:
+ logger.info("Measurement is being processed (status: %s, %s, %s). Please wait." % (measurement.upload,
+ measurement.pre_processing,
+ measurement.processing))
+ time.sleep(10)
+ measurement = self.get_measurement(measurement_id)
+ logger.info("Measurement processing finished (status: %s, %s, %s)." % (measurement.upload,
+ measurement.pre_processing,
+ measurement.processing))
+ if measurement.pre_processing == 127:
+ logger.info("Downloading preprocessed files.")
+ self.download_preprocessed(measurement_id)
+ if measurement.processing == 127:
+ logger.info("Downloading optical files.")
+ self.download_optical(measurement_id)
+ logger.info("Downloading graphs.")
+ self.download_graphs(measurement_id)
+ logger.info("--- Processing finished. ---")
+ return measurement
+
+ def get_status(self, measurement_id):
+ """ Get the processing status for a measurement id through the API. """
+ measurement_url = urlparse.urljoin(API_BASE_URL, 'measurements/?id__exact=%s' % measurement_id)
+
+ response = self.session.get(measurement_url,
+ auth=self.auth,
+ verify=False)
+
+ response_dict = response.json()
+
+ if response_dict['objects']:
+ measurement_list = response_dict['objects']
+ measurement = Measurement(measurement_list[0])
+ return (measurement.upload, measurement.pre_processing, measurement.processing)
+ else:
+ logger.error("No measurement with id %s found on the SCC." % measurement_id)
+ return None
+
+ def get_measurement(self, measurement_id):
+ measurement_url = urlparse.urljoin(API_BASE_URL, 'measurements/%s/' % measurement_id)
+
+ response = self.session.get(measurement_url,
+ auth=self.auth,
+ verify=False)
+
+ response_dict = response.json()
+
+ if response_dict:
+ measurement = Measurement(response_dict)
+ return measurement
+ else:
+ logger.error("No measurement with id %s found on the SCC." % measurement_id)
+ return None
+
+ def delete_measurement(self, measurement_id):
+ """ Deletes a measurement with the provided measurement id. The user
+ should have the appropriate permissions.
+
+ The procedures is performed directly through the web interface and
+ NOT through the API.
+ """
+ # Get the measurement object
+ measurement = self.get_measurement(measurement_id)
+
+ # Check that it exists
+ if measurement is None:
+ logger.warning("Nothing to delete.")
+ return None
+
+ # Go the the page confirming the deletion
+ delete_url = DELETE_MEASUREMENT.format(measurement.id)
+
+ confirm_page = self.session.get(delete_url,
+ auth=self.auth,
+ verify=False)
+
+ # Check that the page opened properly
+ if confirm_page.status_code != 200:
+ logger.warning("Could not open delete page. Status: {0}".format(confirm_page.status_code))
+ return None
+
+ # Delete the measurement
+ delete_page = self.session.post(delete_url,
+ auth=self.auth,
+ verify=False,
+ data={'post': 'yes'},
+ headers={'X-CSRFToken': confirm_page.cookies['csrftoken'],
+ 'referer': delete_url}
+ )
+ if delete_page.status_code != 200:
+ logger.warning("Something went wrong. Delete page status: {0}".format(
+ delete_page.status_code))
+ return None
+
+ logger.info("Deleted measurement {0}".format(measurement_id))
+ return True
+
+ def available_measurements(self):
+ """ Get a list of available measurement on the SCC. """
+ measurement_url = urlparse.urljoin(API_BASE_URL, 'measurements')
+ response = self.session.get(measurement_url,
+ auth=self.auth,
+ verify=False)
+ response_dict = response.json()
+
+ measurements = None
+ if response_dict:
+ measurement_list = response_dict['objects']
+ measurements = [Measurement(measurement_dict) for measurement_dict in measurement_list]
+ logger.info("Found %s measurements on the SCC." % len(measurements))
+ else:
+ logger.warning("No response received from the SCC when asked for available measurements.")
+
+ return measurements
+
+ def measurement_id_for_date(self, t1, call_sign='bu', base_number=0):
+ """ Give the first available measurement id on the SCC for the specific
+ date.
+ """
+ date_str = t1.strftime('%Y%m%d')
+ search_url = urlparse.urljoin(API_BASE_URL, 'measurements/?id__startswith=%s' % date_str)
+
+ response = self.session.get(search_url,
+ auth=self.auth,
+ verify=False)
+
+ response_dict = response.json()
+
+ measurement_id = None
+
+ if response_dict:
+ measurement_list = response_dict['objects']
+ existing_ids = [measurement_dict['id'] for measurement_dict in measurement_list]
+
+ measurement_number = base_number
+ measurement_id = "%s%s%02i" % (date_str, call_sign, measurement_number)
+
+ while measurement_id in existing_ids:
+ measurement_number = measurement_number + 1
+ measurement_id = "%s%s%02i" % (date_str, call_sign, measurement_number)
+ if measurement_number == 100:
+ raise ValueError('No available measurement id found.')
+
+ return measurement_id
+
+
+class ApiObject:
+ """ A generic class object. """
+
+ def __init__(self, dict_response):
+
+ if dict_response:
+ # Add the dictionary key value pairs as object properties
+ for key, value in dict_response.items():
+ setattr(self, key, value)
+ self.exists = True
+ else:
+ self.exists = False
+
+
+class Measurement(ApiObject):
+ """ This class represents the measurement object as returned in the SCC API.
+ """
+
+ @property
+ def is_running(self):
+ """ Returns True if the processing has not finished.
+ """
+ if self.upload == 0:
+ return False
+ if self.pre_processing == -127:
+ return False
+ if self.pre_processing == 127:
+ if self.processing in [127, -127]:
+ return False
+ return True
+
+ @property
+ def rerun_processing_url(self):
+ return RERUN_PROCESSING.format(self.id)
+
+ @property
+ def rerun_all_url(self):
+ return RERUN_ALL.format(self.id)
+
+ def __str__(self):
+ return "%s: %s, %s, %s" % (self.id,
+ self.upload,
+ self.pre_processing,
+ self.processing)
+
+
+def upload_file(filename, system_id, auth=BASIC_LOGIN, credential=DJANGO_LOGIN):
+ """ Shortcut function to upload a file to the SCC. """
+ logger.info("Uploading file %s, using sytem %s" % (filename, system_id))
+
+ scc = SCC(auth)
+ scc.login(credential)
+ measurement_id = scc.upload_file(filename, system_id)
+ scc.logout()
+ return measurement_id
+
+
+def process_file(filename, system_id, auth=BASIC_LOGIN, credential=DJANGO_LOGIN):
+ """ Shortcut function to process a file to the SCC. """
+ logger.info("Processing file %s, using sytem %s" % (filename, system_id))
+
+ scc = SCC(auth)
+ scc.login(credential)
+ measurement = scc.process(filename, system_id)
+ scc.logout()
+ return measurement
+
+
+def delete_measurement(measurement_id, auth=BASIC_LOGIN, credential=DJANGO_LOGIN):
+ """ Shortcut function to delete a measurement from the SCC. """
+ logger.info("Deleting %s" % measurement_id)
+ scc = SCC(auth)
+ scc.login(credential)
+ scc.delete_measurement(measurement_id)
+ scc.logout()
+
+
+def rerun_all(measurement_id, monitor, auth=BASIC_LOGIN, credential=DJANGO_LOGIN):
+ """ Shortcut function to delete a measurement from the SCC. """
+ logger.info("Rerunning all products for %s" % measurement_id)
+ scc = SCC(auth)
+ scc.login(credential)
+ scc.rerun_all(measurement_id, monitor)
+ scc.logout()
+
+
+def rerun_processing(measurement_id, monitor, auth=BASIC_LOGIN, credential=DJANGO_LOGIN):
+ """ Shortcut function to delete a measurement from the SCC. """
+ logger.info("Rerunning (optical) processing for %s" % measurement_id)
+ scc = SCC(auth)
+ scc.login(credential)
+ scc.rerun_processing(measurement_id, monitor)
+ scc.logout()
+
+def main():
+ # Define the command line arguments.
+ parser = argparse.ArgumentParser()
+ parser.add_argument("filename", nargs='?', help="Measurement file name or path.", default='')
+ parser.add_argument("system", nargs='?', help="Processing system id.", default=0)
+ parser.add_argument("-p", "--process", help="Wait for the results of the processing.",
+ action="store_true")
+ parser.add_argument("--delete", help="Measurement ID to delete.")
+ parser.add_argument("--rerun-all", help="Measurement ID to rerun.")
+ parser.add_argument("--rerun-processing", help="Measurement ID to rerun processing routings.")
+
+ # Verbosity settings from http://stackoverflow.com/a/20663028
+ parser.add_argument('-d', '--debug', help="Print debugging information.", action="store_const",
+ dest="loglevel", const=logging.DEBUG, default=logging.INFO,
+ )
+ parser.add_argument('-s', '--silent', help="Show only warning and error messages.", action="store_const",
+ dest="loglevel", const=logging.WARNING
+ )
+
+ args = parser.parse_args()
+
+ # Get the logger with the appropriate level
+ logging.basicConfig(format='%(levelname)s: %(message)s', level=args.loglevel)
+
+ # If the arguments are OK, try to login on the site and upload.
+ if args.delete:
+ # If the delete is provided, do nothing else
+ delete_measurement(args.delete)
+ elif args.rerun_all:
+ rerun_all(args.rerun_all, args.process)
+ elif args.rerun_processing:
+ rerun_processing(args.rerun_processing, args.process)
+ else:
+ if (args.filename == '') or (args.system == 0):
+ parser.error('Provide a valid filename and system parameters.\nRun with -h for help.\n')
+
+ if args.process:
+ process_file(args.filename, args.system)
+ else:
+ upload_file(args.filename, args.system)
+
+
+# When running through terminal
+if __name__ == '__main__':
+ main()