Updated old usescases and updated the docs.

Adding new usecases in the documentation.

Merge from 89:270ab1db32db

* New description of input netcdf file (v3).

New netcdf structure pdf file.

depolarization.rst : Updated to the last SSC version 4.0 (November 2, 2016).

Added one more figure to the depolarization documentation.

Merge from 83:44e5ebae6813

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