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example_script/convert_lilas.py@62da57352e86 (annotated)

example_script/convert_lilas.py

Tue, 07 Jun 2016 18:39:53 +0300

author

Ioannis <binietoglou@noa.gr>

date

Tue, 07 Jun 2016 18:39:53 +0300

changeset 42

62da57352e86

permissions

-rw-r--r--

Example command line script for lilas system.

binietoglou@42	1	""" Sample script to convert licel files to SCC netcdf format.
binietoglou@42	2
binietoglou@42	3	The script assumes the following things:
binietoglou@42	4
binietoglou@42	5	1. You have already installed the atmospheric_lidar module (e.g. using pip).
binietoglou@42	6	2. You have create a class in a file "lilas" describing your system (described the readme file).
binietoglou@42	7	If you want to use it for a different system you need to change the script to use your own class
binietoglou@42	8
binietoglou@42	9	Run the script using: python convert_lilas.py <your options>
binietoglou@42	10
binietoglou@42	11	Examples
binietoglou@42	12	--------
binietoglou@42	13	# This will read all files starting with "l" from "my_dir".
binietoglou@42	14	# It will guess the measurement ID based on the date of the files, and will assume measurement number 00.
binietoglou@42	15	# For example, the new measurment id could be 20120101mb00
binietoglou@42	16	python convert_lilas.py my_dir l*.
binietoglou@42	17
binietoglou@42	18	# This will use the measurement id you defined.
binietoglou@42	19	python convert_lilas.py my_dir l*. -m 20120204mb32 # It will create the file 20120204mb32.nc
binietoglou@42	20
binietoglou@42	21	Help string
binietoglou@42	22	-----------
binietoglou@42	23	# To get this, run: python convert_lilas.py -h
binietoglou@42	24	usage: convert_lilas.py [-h] [-m MEASUREMENT_ID] [-n MEASUREMENT_NUMBER]
binietoglou@42	25	[directory] [searchstring]
binietoglou@42	26
binietoglou@42	27	positional arguments:
binietoglou@42	28	directory Directory with licel files.
binietoglou@42	29	searchstring Processing system id.
binietoglou@42	30
binietoglou@42	31	optional arguments:
binietoglou@42	32	-h, --help show this help message and exit
binietoglou@42	33	-m MEASUREMENT_ID, --measurement_id MEASUREMENT_ID
binietoglou@42	34	The new measurement id
binietoglou@42	35	-n MEASUREMENT_NUMBER, --measurement_number MEASUREMENT_NUMBER
binietoglou@42	36	The measurement number for the date, if no id is
binietoglou@42	37	provided
binietoglou@42	38
binietoglou@42	39	"""
binietoglou@42	40
binietoglou@42	41	import glob
binietoglou@42	42	import os
binietoglou@42	43	import argparse
binietoglou@42	44
binietoglou@42	45	from atmospheric_lidar import lilas
binietoglou@42	46
binietoglou@42	47
binietoglou@42	48	if __name__ == "__main__":
binietoglou@42	49
binietoglou@42	50	# Define the command line arguments.
binietoglou@42	51	parser = argparse.ArgumentParser()
binietoglou@42	52	parser.add_argument("directory", nargs='?', help="Directory with licel files.", default='.')
binietoglou@42	53	parser.add_argument("searchstring", nargs='?', help="Processing system id.", default="*.*")
binietoglou@42	54	parser.add_argument("-m", "--measurement_id", help="The new measurement id", default=None)
binietoglou@42	55	parser.add_argument("-n", "--measurement_number", help="The measurement number for the date, if no id is provided", default="00")
binietoglou@42	56	args = parser.parse_args()
binietoglou@42	57
binietoglou@42	58
binietoglou@42	59	# Get a list of files to convert
binietoglou@42	60	search_str = os.path.join(args.directory, args.searchstring)
binietoglou@42	61	files = glob.glob(search_str)
binietoglou@42	62
binietoglou@42	63	if files:
binietoglou@42	64	# Read the files
binietoglou@42	65	print "Reading {0} files from {1}".format(len(files), args.directory)
binietoglou@42	66	measurement = lilas.LilasLidarMeasurement(files)
binietoglou@42	67
binietoglou@42	68	#Save the netcdf
binietoglou@42	69	print "Saving netcdf."
binietoglou@42	70	measurement.set_measurement_id(args.measurement_id, args.measurement_number)
binietoglou@42	71	measurement.save_as_netcdf()
binietoglou@42	72	print "Created file ", measurement.scc_filename
binietoglou@42	73	else:
binietoglou@42	74	print "No files found when searching for ", search_str