Mercurial > public > scc_access / changeset
changeset
Removing duplicate scc_access and settings file.
Fri, 15 Dec 2017 22:50:15 +0200
- author
- Iannis <i.binietoglou@impworks.gr>
- date
- Fri, 15 Dec 2017 22:50:15 +0200
- changeset 10
- 12b2759a61ef
- parent 9
- 06abef993230
- child 11
- da2c50558296
Removing duplicate scc_access and settings file.
Removing setting file in python format.
| scc_access.py | file | annotate | diff | comparison | revisions | |
| scc_access/settings.sample.py | file | annotate | diff | comparison | revisions | |
| settings.sample.py | file | annotate | diff | comparison | revisions |
--- a/scc_access.py Tue Dec 12 09:29:34 2017 +0200 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,527 +0,0 @@ -#!/usr/bin/env python -""" -The MIT License (MIT) - -Copyright (c) 2015, Ioannis Binietoglou - -Permission is hereby granted, free of charge, to any person obtaining a copy -of this software and associated documentation files (the "Software"), to deal -in the Software without restriction, including without limitation the rights -to use, copy, modify, merge, publish, distribute, sublicense, and/or sell -copies of the Software, and to permit persons to whom the Software is -furnished to do so, subject to the following conditions: - -The above copyright notice and this permission notice shall be included in -all copies or substantial portions of the Software. - -THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR -IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, -FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE -AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER -LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, -OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN -THE SOFTWARE. -""" - -__version__ = "0.6.0" - -# Try to read the settings from the settings.py file -try: - from settings import * -except: - raise ImportError( - """A settings file (setting.py) is required to run the script. - You can use settings.sample.py as a template.""") - -import requests -requests.packages.urllib3.disable_warnings() - -import urlparse -import argparse -import os -import re -import time -import StringIO -from zipfile import ZipFile -import datetime -import logging - -logger = logging.getLogger(__name__) - - -# Construct the absolute URLs -LOGIN_URL = urlparse.urljoin(BASE_URL, 'accounts/login/') -UPLOAD_URL = urlparse.urljoin(BASE_URL, 'data_processing/measurements/quick/') -DOWNLOAD_PREPROCESSED = urlparse.urljoin(BASE_URL, 'data_processing/measurements/{0}/download-preprocessed/') -DOWNLOAD_OPTICAL = urlparse.urljoin(BASE_URL, 'data_processing/measurements/{0}/download-optical/') -DOWNLOAD_GRAPH = urlparse.urljoin(BASE_URL, 'data_processing/measurements/{0}/download-plots/') -RERUN_ALL = urlparse.urljoin(BASE_URL, 'data_processing/measurements/{0}/rerun-all/') -RERUN_PROCESSING = urlparse.urljoin(BASE_URL, 'data_processing/measurements/{0}/rerun-optical/') - -DELETE_MEASUREMENT = urlparse.urljoin(BASE_URL, 'admin/database/measurements/{0}/delete/') -API_BASE_URL = urlparse.urljoin(BASE_URL, 'api/v1/') - -# The regex to find the measurement id from the measurement page -# This should be read from the uploaded file, but would require an extra NetCDF module. -regex = "<h3>Measurement (?P<measurement_id>.{12}) <small>" - - -class SCC: - """ A simple class that will attempt to upload a file on the SCC server. - The uploading is done by simulating a normal browser session. In the current - version no check is performed, and no feedback is given if the upload - was successful. If everything is setup correctly, it will work. - """ - - def __init__(self, auth=BASIC_LOGIN, output_dir=OUTPUT_DIR): - self.auth = auth - self.output_dir = output_dir - self.session = requests.Session() - - def login(self, credentials=DJANGO_LOGIN): - """ Login the the website. """ - logger.debug("Attempting to login to SCC, username %s." % credentials[0]) - self.login_credentials = {'username': credentials[0], - 'password': credentials[1]} - - logger.debug("Accessing login page at %s." % LOGIN_URL) - - # Get upload form - login_page = self.session.get(LOGIN_URL, - auth=self.auth, verify=False) - - logger.debug("Submiting credentials.") - # Submit the login data - login_submit = self.session.post(LOGIN_URL, - data=self.login_credentials, - headers={'X-CSRFToken': login_page.cookies['csrftoken'], - 'referer': LOGIN_URL}, - verify=False, - auth=self.auth) - return login_submit - - def logout(self): - pass - - def upload_file(self, filename, system_id): - """ Upload a filename for processing with a specific system. If the - upload is successful, it returns the measurement id. """ - # Get submit page - upload_page = self.session.get(UPLOAD_URL, - auth=self.auth, - verify=False) - - # Submit the data - upload_data = {'system': system_id} - files = {'data': open(filename, 'rb')} - - logging.info("Uploading of file %s started." % filename) - - upload_submit = self.session.post(UPLOAD_URL, - data=upload_data, - files=files, - headers={'X-CSRFToken': upload_page.cookies['csrftoken'], - 'referer': UPLOAD_URL}, - verify=False, - auth=self.auth) - - if upload_submit.status_code != 200: - logging.warning("Connection error. Status code: %s" % upload_submit.status_code) - return False - - # Check if there was a redirect to a new page. - if upload_submit.url == UPLOAD_URL: - measurement_id = False - logging.error("Uploaded file rejected! Try to upload manually to see the error.") - else: - measurement_id = re.findall(regex, upload_submit.text)[0] - logging.error("Successfully uploaded measurement with id %s." % measurement_id) - - return measurement_id - - def download_files(self, measurement_id, subdir, download_url): - """ Downloads some files from the download_url to the specified - subdir. This method is used to download preprocessed file, optical - files etc. - """ - # Get the file - request = self.session.get(download_url, auth=self.auth, - verify=False, - stream=True) - - # Create the dir if it does not exist - local_dir = os.path.join(self.output_dir, measurement_id, subdir) - if not os.path.exists(local_dir): - os.makedirs(local_dir) - - # Save the file by chunk, needed if the file is big. - memory_file = StringIO.StringIO() - - for chunk in request.iter_content(chunk_size=1024): - if chunk: # filter out keep-alive new chunks - memory_file.write(chunk) - memory_file.flush() - - zip_file = ZipFile(memory_file) - - for ziped_name in zip_file.namelist(): - basename = os.path.basename(ziped_name) - - local_file = os.path.join(local_dir, basename) - - with open(local_file, 'wb') as f: - f.write(zip_file.read(ziped_name)) - - def download_preprocessed(self, measurement_id): - """ Download preprocessed files for the measurement id. """ - # Construct the download url - download_url = DOWNLOAD_PREPROCESSED.format(measurement_id) - self.download_files(measurement_id, 'scc_preprocessed', download_url) - - def download_optical(self, measurement_id): - """ Download optical files for the measurement id. """ - # Construct the download url - download_url = DOWNLOAD_OPTICAL.format(measurement_id) - self.download_files(measurement_id, 'scc_optical', download_url) - - def download_graphs(self, measurement_id): - """ Download profile graphs for the measurement id. """ - # Construct the download url - download_url = DOWNLOAD_GRAPH.format(measurement_id) - self.download_files(measurement_id, 'scc_plots', download_url) - - def rerun_processing(self, measurement_id, monitor=True): - measurement = self.get_measurement(measurement_id) - - if measurement: - request = self.session.get(measurement.rerun_processing_url, auth=self.auth, - verify=False, - stream=True) - - if request.status_code != 200: - logging.error("Could not rerun processing for %s. Status code: %s" % (measurement_id, request.status_code)) - return - - if monitor: - self.monitor_processing(measurement_id) - - def rerun_all(self, measurement_id, monitor=True): - logger.debug("Started rerun_all procedure.") - - logger.debug("Getting measurement %s" % measurement_id) - measurement = self.get_measurement(measurement_id) - - if measurement: - logger.debug("Attempting to rerun all processing through %s." % measurement.rerun_all_url) - - request = self.session.get(measurement.rerun_all_url, auth=self.auth, - verify=False, - stream=True) - - if request.status_code != 200: - logger.error("Could not rerun pre processing for %s. Status code: %s" % - (measurement_id, request.status_code)) - return - - if monitor: - self.monitor_processing(measurement_id) - - def process(self, filename, system_id): - """ Upload a file for processing and wait for the processing to finish. - If the processing is successful, it will download all produced files. - """ - logger.info("--- Processing started on %s. ---" % datetime.datetime.now()) - # Upload file - measurement_id = self.upload_file(filename, system_id) - - measurement = self.monitor_processing(measurement_id) - return measurement - - def monitor_processing(self, measurement_id): - """ Monitor the processing progress of a measurement id""" - - measurement = self.get_measurement(measurement_id) - if measurement is not None: - while measurement.is_running: - logger.info("Measurement is being processed (status: %s, %s, %s). Please wait." % (measurement.upload, - measurement.pre_processing, - measurement.processing)) - time.sleep(10) - measurement = self.get_measurement(measurement_id) - logger.info("Measurement processing finished (status: %s, %s, %s)." % (measurement.upload, - measurement.pre_processing, - measurement.processing)) - if measurement.pre_processing == 127: - logger.info("Downloading preprocessed files.") - self.download_preprocessed(measurement_id) - if measurement.processing == 127: - logger.info("Downloading optical files.") - self.download_optical(measurement_id) - logger.info("Downloading graphs.") - self.download_graphs(measurement_id) - logger.info("--- Processing finished. ---") - return measurement - - def get_status(self, measurement_id): - """ Get the processing status for a measurement id through the API. """ - measurement_url = urlparse.urljoin(API_BASE_URL, 'measurements/?id__exact=%s' % measurement_id) - - response = self.session.get(measurement_url, - auth=self.auth, - verify=False) - - response_dict = response.json() - - if response_dict['objects']: - measurement_list = response_dict['objects'] - measurement = Measurement(measurement_list[0]) - return (measurement.upload, measurement.pre_processing, measurement.processing) - else: - logger.error("No measurement with id %s found on the SCC." % measurement_id) - return None - - def get_measurement(self, measurement_id): - measurement_url = urlparse.urljoin(API_BASE_URL, 'measurements/%s/' % measurement_id) - - response = self.session.get(measurement_url, - auth=self.auth, - verify=False) - - response_dict = response.json() - - if response_dict: - measurement = Measurement(response_dict) - return measurement - else: - logger.error("No measurement with id %s found on the SCC." % measurement_id) - return None - - def delete_measurement(self, measurement_id): - """ Deletes a measurement with the provided measurement id. The user - should have the appropriate permissions. - - The procedures is performed directly through the web interface and - NOT through the API. - """ - # Get the measurement object - measurement = self.get_measurement(measurement_id) - - # Check that it exists - if measurement is None: - logger.warning("Nothing to delete.") - return None - - # Go the the page confirming the deletion - delete_url = DELETE_MEASUREMENT.format(measurement.id) - - confirm_page = self.session.get(delete_url, - auth=self.auth, - verify=False) - - # Check that the page opened properly - if confirm_page.status_code != 200: - logger.warning("Could not open delete page. Status: {0}".format(confirm_page.status_code)) - return None - - # Delete the measurement - delete_page = self.session.post(delete_url, - auth=self.auth, - verify=False, - data={'post': 'yes'}, - headers={'X-CSRFToken': confirm_page.cookies['csrftoken'], - 'referer': delete_url} - ) - if delete_page.status_code != 200: - logger.warning("Something went wrong. Delete page status: {0}".format( - delete_page.status_code)) - return None - - logger.info("Deleted measurement {0}".format(measurement_id)) - return True - - def available_measurements(self): - """ Get a list of available measurement on the SCC. """ - measurement_url = urlparse.urljoin(API_BASE_URL, 'measurements') - response = self.session.get(measurement_url, - auth=self.auth, - verify=False) - response_dict = response.json() - - measurements = None - if response_dict: - measurement_list = response_dict['objects'] - measurements = [Measurement(measurement_dict) for measurement_dict in measurement_list] - logger.info("Found %s measurements on the SCC." % len(measurements)) - else: - logger.warning("No response received from the SCC when asked for available measurements.") - - return measurements - - def measurement_id_for_date(self, t1, call_sign='bu', base_number=0): - """ Give the first available measurement id on the SCC for the specific - date. - """ - date_str = t1.strftime('%Y%m%d') - search_url = urlparse.urljoin(API_BASE_URL, 'measurements/?id__startswith=%s' % date_str) - - response = self.session.get(search_url, - auth=self.auth, - verify=False) - - response_dict = response.json() - - measurement_id = None - - if response_dict: - measurement_list = response_dict['objects'] - existing_ids = [measurement_dict['id'] for measurement_dict in measurement_list] - - measurement_number = base_number - measurement_id = "%s%s%02i" % (date_str, call_sign, measurement_number) - - while measurement_id in existing_ids: - measurement_number = measurement_number + 1 - measurement_id = "%s%s%02i" % (date_str, call_sign, measurement_number) - if measurement_number == 100: - raise ValueError('No available measurement id found.') - - return measurement_id - - -class ApiObject: - """ A generic class object. """ - - def __init__(self, dict_response): - - if dict_response: - # Add the dictionary key value pairs as object properties - for key, value in dict_response.items(): - setattr(self, key, value) - self.exists = True - else: - self.exists = False - - -class Measurement(ApiObject): - """ This class represents the measurement object as returned in the SCC API. - """ - - @property - def is_running(self): - """ Returns True if the processing has not finished. - """ - if self.upload == 0: - return False - if self.pre_processing == -127: - return False - if self.pre_processing == 127: - if self.processing in [127, -127]: - return False - return True - - @property - def rerun_processing_url(self): - return RERUN_PROCESSING.format(self.id) - - @property - def rerun_all_url(self): - return RERUN_ALL.format(self.id) - - def __str__(self): - return "%s: %s, %s, %s" % (self.id, - self.upload, - self.pre_processing, - self.processing) - - -def upload_file(filename, system_id, auth=BASIC_LOGIN, credential=DJANGO_LOGIN): - """ Shortcut function to upload a file to the SCC. """ - logger.info("Uploading file %s, using sytem %s" % (filename, system_id)) - - scc = SCC(auth) - scc.login(credential) - measurement_id = scc.upload_file(filename, system_id) - scc.logout() - return measurement_id - - -def process_file(filename, system_id, auth=BASIC_LOGIN, credential=DJANGO_LOGIN): - """ Shortcut function to process a file to the SCC. """ - logger.info("Processing file %s, using sytem %s" % (filename, system_id)) - - scc = SCC(auth) - scc.login(credential) - measurement = scc.process(filename, system_id) - scc.logout() - return measurement - - -def delete_measurement(measurement_id, auth=BASIC_LOGIN, credential=DJANGO_LOGIN): - """ Shortcut function to delete a measurement from the SCC. """ - logger.info("Deleting %s" % measurement_id) - scc = SCC(auth) - scc.login(credential) - scc.delete_measurement(measurement_id) - scc.logout() - - -def rerun_all(measurement_id, monitor, auth=BASIC_LOGIN, credential=DJANGO_LOGIN): - """ Shortcut function to delete a measurement from the SCC. """ - logger.info("Rerunning all products for %s" % measurement_id) - scc = SCC(auth) - scc.login(credential) - scc.rerun_all(measurement_id, monitor) - scc.logout() - - -def rerun_processing(measurement_id, monitor, auth=BASIC_LOGIN, credential=DJANGO_LOGIN): - """ Shortcut function to delete a measurement from the SCC. """ - logger.info("Rerunning (optical) processing for %s" % measurement_id) - scc = SCC(auth) - scc.login(credential) - scc.rerun_processing(measurement_id, monitor) - scc.logout() - - -# When running through terminal -if __name__ == '__main__': - - # Define the command line arguments. - parser = argparse.ArgumentParser() - parser.add_argument("filename", nargs='?', help="Measurement file name or path.", default='') - parser.add_argument("system", nargs='?', help="Processing system id.", default=0) - parser.add_argument("-p", "--process", help="Wait for the results of the processing.", - action="store_true") - parser.add_argument("--delete", help="Measurement ID to delete.") - parser.add_argument("--rerun-all", help="Measurement ID to rerun.") - parser.add_argument("--rerun-processing", help="Measurement ID to rerun processing routings.") - - # Verbosity settings from http://stackoverflow.com/a/20663028 - parser.add_argument('-d', '--debug', help="Print debugging information.", action="store_const", - dest="loglevel", const=logging.DEBUG, default=logging.INFO, - ) - parser.add_argument('-s', '--silent', help="Show only warning and error messages.", action="store_const", - dest="loglevel", const=logging.WARNING - ) - - args = parser.parse_args() - - # Get the logger with the appropriate level - logging.basicConfig(format='%(levelname)s: %(message)s', level=args.loglevel) - - # If the arguments are OK, try to login on the site and upload. - if args.delete: - # If the delete is provided, do nothing else - delete_measurement(args.delete) - elif args.rerun_all: - rerun_all(args.rerun_all, args.process) - elif args.rerun_processing: - rerun_processing(args.rerun_processing, args.process) - else: - if (args.filename == '') or (args.system == 0): - parser.error('Provide a valid filename and system parameters.\nRun with -h for help.\n') - - if args.process: - process_file(args.filename, args.system) - else: - upload_file(args.filename, args.system)
--- a/scc_access/settings.sample.py Tue Dec 12 09:29:34 2017 +0200 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,18 +0,0 @@ -""" This file contains the user-specific settings for the scc_access script. - -You should rename the file settings.sample.py to setting.py. -""" - -# Add here the HTTP user name and password that is needed to access the SCC site. -BASIC_LOGIN = ('username', 'password') - -# Add here the user-name and password that is needed to log in to the SCC site. -# It is recommended to use credential for a user without management privileges -DJANGO_LOGIN = ('username', 'password') - -# Change this to the directory to download the files -OUTPUT_DIR = '/path/to/files/scc_output/' - -# SCC base URL. Normally you shouldn't need to change that. You should change -# this only if you want to use a different SCC installation e.g. a local version. -BASE_URL = 'https://scc.imaa.cnr.it/'
--- a/settings.sample.py Tue Dec 12 09:29:34 2017 +0200 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,18 +0,0 @@ -""" This file contains the user-specific settings for the scc_access script. - -You should rename the file settings.sample.py to setting.py. -""" - -# Add here the HTTP user name and password that is needed to access the SCC site. -BASIC_LOGIN = ('username', 'password') - -# Add here the user-name and password that is needed to log in to the SCC site. -# It is recommended to use credential for a user without management privileges -DJANGO_LOGIN = ('username', 'password') - -# Change this to the directory to download the files -OUTPUT_DIR = '/path/to/files/scc_output/' - -# SCC base URL. Normally you shouldn't need to change that. You should change -# this only if you want to use a different SCC installation e.g. a local version. -BASE_URL = 'https://scc.imaa.cnr.it/'
